hmmer_pdb_all: Mapping between Pfam domains and PDB chains.

Description Usage Format Source

Description

A dataset containing the mapping between Pfam domains (based on HMMER) and PDB for more than 167177 PDB chains.

Usage

1

Format

A data frame with 130678 rows and 8 variables:

PDB_ID

4 letters PDB code

CHAIN_ID

PDB chain id

PdbResNumStart

PDB residue number where the pfam domain starts

PdbResNumEnd

PDB residue number where the pfam domain ends

PFAM_ACC

Pfam id

Source

http://www.rcsb.org/pdb/rest/hmmer?file=hmmer_pdb_all.txt


etaijacob/MAPDB documentation built on Dec. 10, 2019, 1:01 p.m.