Man pages for eteppo/tvs-project
The Bloodomics of Atherosclerosis in the Tampere Vascular Study
| classify_lipids | Calculate sums of TVS lipids within lipid classes. |
| classify_mrna_probes | Classify TVS mRNA probes to genes. |
| combine_data_objects | Combine TVS data objects in the global environment into a... |
| conceal_all | Conceal all values in a dataframe by replacing them with... |
| generate_cache | Import TVS objects and save them in a cache file. |
| import_artery_mrna | Read and clean TVS artery mRNA data file for analysis in R. |
| import_blood_mrna | Read and clean TVS blood mRNA data file for analysis in R. |
| import_clinical_chemistry | Read and clean TVS clinical chemistry variables from database... |
| import_data | Import TVS data as a single dataset object with a row per... |
| import_deaths | Read and clean TVS death/survival data from the TVS database... |
| import_diagnoses | Read and clean TVS diagnosis data from database file for... |
| import_dna | Read and clean TVS DNA data files for analysis. |
| import_dna_taqman | Read and clean TVS TaqMan DNA data file for analysis. |
| import_exposures | Read and clean TVS exposure data from the TVS database file... |
| import_histology | Read and clean TVS tissue/histology data from TVS database... |
| import_lipids | Read and clean TVS lipids data file for analysis. |
| import_lipoproteins | Read and clean TVS lipoprotein data file for analysis. |
| import_lmwm | Read and clean the TVS low molecular weight metabolites... |
| import_macro | Read and clean TVS macroanatomical data from the TVS database... |
| import_mirna | Read and clean TVS miRNA data file for analysis. |
| import_monocyte_mrna | Read and clean TVS monocyte mRNA data file for analysis in R. |
| import_mrna | Read and clean TVS mRNA data files for analysis in R. |
| import_objects | Read and clean TVS datasets from data and metadata directory. |
| import_patients | Import TVS patients metadata file. |
| import_physiology | Read and clean TVS physiological data from the TVS database... |
| import_samples | Import TVS samples metadata file. |
| import_symptoms | Read and clean TVS symptoms data from TVS database file for... |
| import_treatments | Read and clean TVS treatment data from database file for... |
| import_unique_values | Import TVS unique values metadata file. |
| import_variables | Import TVS variables metadata file. |
| install_dependencies | Install all dependencies of the TVS project. |
| install_packages | Install and update many packages at once. |
| load_dependencies | Load all dependencies of the TVS analysis into memory. |
| load_packages | Load many packages to memory at once. |
| overlap_datasets | Create all possible intersections of multiple datasets. |
| plot_causal_network | Visualize a causal network as directed graph from node and... |
| plot_missing | Visualize missing value cells in dataframes. |
| plot_strings | Visualize strings, like unique names, with a wordcloud. |
| plot_table | Create png and svg tables. |
| plot_variables | Visualize the distributions of many variables as one plot... |
| recode_with | Recode values of variables using metadata that maps old... |
| session_packages | Show relevant package information of the current analysis... |
| session_platform | Show relevant platform information of the current analysis... |
| summarise_missingness | Summarise missing values in datasets. |
| summarise_variables | Compute many univariate summary statistics for all variables. |
