import_mrna: Read and clean TVS mRNA data files for analysis in R.
In eteppo/tvs-project: The Bloodomics of Atherosclerosis in the Tampere Vascular Study
Description
Usage
Arguments
Details
Value
Description
Read and clean TVS mRNA data files for analysis in R.
Usage
1
2
3
4
import_mrna(blood_file = "tvs_blood_gwe_loess.txt",
monocyte_file = "tvs_monocyte_gwe_loess.txt",
artery_file = "tvs_plaque_gwe_loess_copy.csv",
samples_file = "samples.csv")
Arguments
blood_file
A full path to the TVS blood mRNA data file.
monocyte_file
A full path to the TVS monocyte mRNA data file.
artery_file
A full path to the TVS artery mRNA data file.
samples_file
A full path to the TVS samples metadata file.
Details
The "samples.csv" metadata-file is used to convert the original "sample_id" identifiers
to the new, within-project, id-system. The "samples.csv"-file also contains more precise "sample_type" information.
Value
A dataset object of class "tbl_df" (tibble) and "data.frame" (base).
eteppo/tvs-project documentation built on Aug. 13, 2019, 8:53 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Details Value
Description
Read and clean TVS mRNA data files for analysis in R.
Usage
1 2 3 4 | import_mrna(blood_file = "tvs_blood_gwe_loess.txt",
monocyte_file = "tvs_monocyte_gwe_loess.txt",
artery_file = "tvs_plaque_gwe_loess_copy.csv",
samples_file = "samples.csv")
|
Arguments
blood_file |
A full path to the TVS blood mRNA data file. |
monocyte_file |
A full path to the TVS monocyte mRNA data file. |
artery_file |
A full path to the TVS artery mRNA data file. |
samples_file |
A full path to the TVS samples metadata file. |
Details
The "samples.csv" metadata-file is used to convert the original "sample_id" identifiers to the new, within-project, id-system. The "samples.csv"-file also contains more precise "sample_type" information.
Value
A dataset object of class "tbl_df" (tibble) and "data.frame" (base).
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.