API for ethanmoyer/ICCE
Iterative Construction of Cyto-epigenetic Evolution
| Global functions | |
|---|---|
| add_data | Man page Source code |
| betas_to_consensus_vector | Man page Source code |
| build_icceTree | Man page Source code |
| create_consensus_vector | Man page Source code |
| create_consensus_vector_p | Source code |
| create_node_matrix | Man page Source code |
| create_tree | Source code |
| cut_tree | Man page Source code |
| fit_betas_to_distribution | Man page Source code |
| fit_betas_to_distribution_p | Man page Source code |
| generate_bimodal_distribution | Man page Source code |
| generate_branch_changes | Man page Source code |
| generate_p_value | Source code |
| generate_p_values | Man page |
| generate_p_values_0 | Source code |
| get_descendant_leaves | Source code |
| get_internal_nodes | Source code |
| get_leaves | Man page Source code |
| get_nodes | Source code |
| get_probes_of_gene | Man page Source code |
| get_reference | Man page Source code |
| get_relevant_genes | Man page Source code |
| get_root | Man page Source code |
| grow_off_leaf | Man page Source code |
| icce_tree | Man page Source code |
| inherit_parental_state | Man page Source code |
| initialize_probe_node_matrix | Man page Source code |
| ninternal_nodes | Man page Source code |
| nleaves | Man page Source code |
| nnodes | Man page Source code |
| nprobes | Man page Source code |
| read_IDAT | Man page Source code |
| reconstruct_internal_nodes | Man page Source code |
| relabel_node_matrix | Man page Source code |
| relabel_tree | Man page Source code |
| remove_NA_probes | Man page Source code |
| remove_branches_from_node | Man page Source code |
| remove_cell_types | Man page Source code |
| remove_intermediate_probes | Man page Source code |
| remove_sex_chr | Man page Source code |
| remove_unapplicable_probes | Man page Source code |
| remove_zero_parsimony_probes | Man page Source code |
| save_data | Man page Source code |
| show_gene_track | Man page Source code |
| show_heatmap | Man page Source code |
| show_tree | Man page Source code |
| simulate_fitch | Source code |
| track_gene | Man page Source code |
| upgma_tree | Man page Source code |
