track_gene: Get proportion of probes methylated, unmethylated, ambiguous...
In ethanmoyer/ICCE: Iterative Construction of Cyto-epigenetic Evolution

Description Usage Arguments Value Examples

This function returns the proportion of each probes that are methylated, unmethylated, ambiguous at each node across a tree.

1	track_gene(icceTree, reference, gene)

`icceTree`	icceTree data structure
`reference`	reference file
`gene`	gene name
`probe_node_matrix`	matrix storing the methylation status across all probes and nodes on a tree

a structure composed of two lists that contain methylation state proportions for internal nodes and methylation state proportions for leaves

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gene_information <- track_gene(icceTree, reference, 'CD81')
thermo_prop_internal_nodes = gene_information$thermo_prop_internal_nodes
thermo_prop_leaves = gene_information$thermo_prop_leaves