show_gene_track: Track the single probe resolution change of a gene

In ethanmoyer/ICCE: Iterative Construction of Cyto-epigenetic Evolution

Description

Displays constructed tree with node labels for the proportion of each probe state for a selected gene. This is saved at the given filename.

Usage

show_gene_track(
  filename,
  tree,
  gene,
  thermo_prop_internal_nodes,
  thermo_prop_leaves
)

Arguments

filename	filename to which the plot will be saved
tree	ape::phylo tree
gene	gene name
thermo_prop_leaves	thermo proportion plot for leaves of all of the probe states
thermo_prop_node	thermo proportion plot for internal nodes of all of the probe states

Value

None

Examples

show_gene_track('tree_CD81', tree=icceTree$tree, gene='CD81', 
thermo_prop_internal_nodes=thermo_prop_internal_nodes, thermo_prop_leaves=
thermo_prop_leaves)
... some visualization 

ethanmoyer/ICCE documentation built on Aug. 25, 2020, 5:18 p.m.