betas_to_consensus_vector: Convert betas matrix to consensus vectors of probes for each...
In ethanmoyer/ICCE: Iterative Construction of Cyto-epigenetic Evolution

Description Usage Arguments Value Examples

This function creates a consensus vector for each group using the betas matrix. Sex cells and unwanted cell groups given the function are removed first. Then the cells are fit to a bimodal distribution and finally compiled into consensus vectors for each cell group.

betas_to_consensus_vector(
  reference_file,
  series_matrix_file,
  betas,
  group_names,
  remove_names
)

`series_matrix_file`	directory location of where given series matrix file is located
`betas`	matrix (rows are cell names, columns are probe names)
`group_names`	list of cell names in betas
`remove_names`	list of cell names in betas
`reference`	reference file

consensus vector for each cell in group names

1 2	consensus_vector <- betas_to_consensus_vector(reference, 'GSE110554/samples_GEOLoadSeriesMatrix.rds', betas, c('NK', "Monocytes", ...), c('A.mix', 'B.mix', ...))