API for etheleon/metamaps
MetamapsDB: R package for querying Metagenomics data against Metabolic Pathways and Gene Centric Assemblies
| Global functions | |
|---|---|
| %$% | Man page |
| %<>% | Man page |
| %>% | Man page |
| AllTrios | Man page |
| addContigProperty | Man page |
| addKOProperty | Man page |
| adjacentPairs | Man page |
| annotateContigs.taxonomy | Man page |
| blatting | Man page |
| buildE | Man page |
| buildTree | Man page |
| categorize | Man page |
| connect | Man page |
| contigInfo | Man page |
| contigsSurvive.repeats.readNum | Man page |
| contigsSurvive.repeats.rpk | Man page |
| contractMetab | Man page |
| cpdname | Man page |
| dbquery | Man page |
| drawGradient | Man page |
| dynPlots | Man page |
| dynamicThreshold | Man page |
| extractFromPath | Man page |
| findHomology | Man page |
| findK | Man page |
| findNextKO | Man page |
| findPerl | Man page |
| findPython | Man page Man page |
| findSeeds | Man page |
| findTrios | Man page |
| findV | Man page |
| findtype | Man page |
| gi2rank | Man page |
| grep.cDNA | Man page |
| grepReads | Man page |
| grepgraph | Man page |
| grepgraph.cpd | Man page |
| grepgraph_cpd | Man page |
| ig2ggplot | Man page |
| igraph2gexf | Man page |
| index | Man page |
| ko2path | Man page |
| koname | Man page |
| ksCal | Man page |
| lca | Man page |
| listquery | Man page |
| lookupTable | Man page |
| make.data.frame | Man page |
| map | Man page |
| mapContig | Man page |
| mapReads2MDR | Man page |
| mappingInfo | Man page |
| mdrRanges | Man page |
| nitrogenMetab | Man page |
| path2kingdom | Man page |
| path2ko | Man page |
| pathways | Man page |
| plotClassification | Man page |
| prettifyGraph | Man page |
| readStatusReader | Man page |
| rolling | Man page |
| scg | Man page |
| sigmaGraph | Man page |
| simpleThres | Man page |
| simulated | Man page |
| surrNODES | Man page |
| taxnam.sql | Man page |
| taxname | Man page |
| top500kos | Man page |
| trio.local | Man page |
