mdrRanges: Returns contig ranges for those captured within the MDR
In etheleon/metamaps: MetamapsDB: R package for querying Metagenomics data against Metabolic Pathways and Gene Centric Assemblies
Description
Usage
Arguments
Examples
Description
Header for contigs
contig00026 ref|YP_002288046.1| (ntRev) ## spanning:123 msaStart:653 msaEND:944 max10BPwindow:205.4 contigStart: 221 contigEnd: 421
Give GRanges output with seqname ko|contig00001
Usage
1
mdrRanges(ko, passDir)
Arguments
ko
the KO of interest
passDir
path to pAss outputs
Examples
1
2
3
4
## Not run:
locsMDR = mdrRanges('K00927')
## End(Not run)
etheleon/metamaps documentation built on May 16, 2019, 9:05 a.m.
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Description Usage Arguments Examples
Description
Header for contigs contig00026 ref|YP_002288046.1| (ntRev) ## spanning:123 msaStart:653 msaEND:944 max10BPwindow:205.4 contigStart: 221 contigEnd: 421 Give GRanges output with seqname ko|contig00001
Usage
1 | mdrRanges(ko, passDir)
|
Arguments
ko |
the KO of interest |
passDir |
path to pAss outputs |
Examples
1 2 3 4 | ## Not run:
locsMDR = mdrRanges('K00927')
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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