find_evalue_cutoff: Calculate E-value cutoff
In evanamartin/TopPICR: What the Package Does (One Line, Title Case)
find_evalue_cutoff R Documentation
Calculate E-value cutoff
Description
Calculates the E-value cutoff that keeps the FDR under the given threshold
within each annotation type.
Usage
find_evalue_cutoff(x, fdr_threshold)
Arguments
x
A data.table output from either the augment_annotation
or map_proteoform function.
fdr_threshold
A value between 0 and 1 indicating the desired FDR
level.
Value
A vector with three elements. These elements correspond to the
E-value cutoff for the three annotation types (SwissProt, VarSplic, and
TrEMBL). Note: the order of the annotation types depends on the order they
appear in the AnnType column.
Author(s)
Evan A Martin
evanamartin/TopPICR documentation built on Dec. 9, 2022, 8:05 p.m.
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| find_evalue_cutoff | R Documentation |
Calculate E-value cutoff
Description
Calculates the E-value cutoff that keeps the FDR under the given threshold within each annotation type.
Usage
find_evalue_cutoff(x, fdr_threshold)
Arguments
x |
A |
fdr_threshold |
A value between 0 and 1 indicating the desired FDR level. |
Value
A vector with three elements. These elements correspond to the E-value cutoff for the three annotation types (SwissProt, VarSplic, and TrEMBL). Note: the order of the annotation types depends on the order they appear in the AnnType column.
Author(s)
Evan A Martin
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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