map_proteoform: Map proteoforms to proteins

In evanamartin/TopPICR: What the Package Does (One Line, Title Case)

Map proteoforms to proteins

Description

Add variables for a given proteoform in relation to the protein(s) it maps to. For example, the location of the first and last amino acid where the proteoform matches the protein, percentage of the protein the proteoform covers, and length of the protein.

Usage

map_proteoform(x, fst_path, fst_name)

Arguments

x	A data.table output from the read_toppic function.
fst_path	A character string specifying the path to the protein database (.fasta) file.
fst_name	A character string containing the name of the .fasta file.

Value

A data.table with additional variables containing information on the sequence in relation to its parent protein. For example, the location of the first and last amino acid, percent coverage of the parent protein, and protein length.

Author(s)

Evan A Martin

evanamartin/TopPICR documentation built on Dec. 9, 2022, 8:05 p.m.