clustering-class: clustering

In eytan-weinstein/scClustMatch: scClustMatch: A data visualization tool for interpreting the effects of reference choice on scRNAseq clustering results

clustering

Description

An S4 class storing information related to a clustering of scRNAseq data.

Slots

Seurat_object

The Seurat object output of a clustering pipeline run in Seurat. This output–commonly saved locally using the Seurat::saveRDS command–should bind the data produced by running all steps in a standard clustering pipeline up to and including non-linear dimensionality reduction (see "https://satijalab.org/seurat/articles/pbmc3k_tutorial.html").

clustering_resolution

The resolution parameter used in that pipeline. This must be some real number between 0 and 10 (inclusive).

dims

The dimensions of reduction used in that pipeline. This must be some integer between 1 and 100 (inclusive).

eytan-weinstein/scClustMatch documentation built on May 3, 2022, 7:31 p.m.