get_first_clustering: get_first_clustering

In eytan-weinstein/scClustMatch: scClustMatch: A data visualization tool for interpreting the effects of reference choice on scRNAseq clustering results

get_first_clustering

Description

Generates an S4 clustering class storing information related to the clustering of reads aligned to the user's Reference Genome #1.

Usage

get_first_clustering(first_directory, reference_resolution, dims)

Arguments

first_directory	The file path to the user's local directory containing the (1) barcodes/cell IDs, (2) features/gene IDs, and (3) count matrix outputted by the alignment of reads to Reference Genome #1.
reference_resolution	The resolution at which to cluster the reads.
dims	(optional) The dimensions of reduction with which to cluster the reads. If not selected by the user, this parameter is set to 30 by default.

Value

An S4 clustering class storing information related to the user's Reference Genome #1 clustering.

eytan-weinstein/scClustMatch documentation built on May 3, 2022, 7:31 p.m.