get_second_clustering: get_second_clustering

In eytan-weinstein/scClustMatch: scClustMatch: A data visualization tool for interpreting the effects of reference choice on scRNAseq clustering results

get_second_clustering

Description

Generates an S4 clustering class storing information related to the clustering of reads aligned to the user's Reference Genome #2. The resolution of this clustering is optimized within an error of +/- 0.01 so as to maximize its similarity to the user's Reference Genome #1 clustering.

Usage

get_second_clustering(second_directory, first_clustering)

Arguments

second_directory	The file path to the user's local directory containing the (1) barcodes/cell IDs, (2) features/gene IDs, and (3) count matrix outputted by the alignment of reads to Reference Genome #2.
first_clustering	The S4 clustering class storing information related to the user's Reference Genome #1 clustering.

Value

An S4 clustering class storing information related to the user's Reference Genome #2 clustering.

eytan-weinstein/scClustMatch documentation built on May 3, 2022, 7:31 p.m.