| biocbox | Construct a bioconductor classed object from an analysis. |
| comparable | Are two facile objects comparable? |
| compare | Compares two (or more(?)) FacileAnalysisResults against each... |
| contrast | Extract the contrast defined. |
| design | Extract the design matrix from objects used in a linear... |
| FacileAnalysisResultViz | Methods to interactively explore and report... |
| faro | Extract the internal (F)acile(A)nalysis(R)esult (O)bject from... |
| fdge | Peform a differential expression analysis. |
| fdge-helpers | Checks to see if fdge analysis results are from a ttest or... |
| fdge_methods | A table of assay_type,dge_method combination parameters |
| ffsea | Performs Feature (Gene) Set Enrichment Analyses |
| ffsea_methods | Returns the types of featureset enrichment methods available... |
| flm_def | Builds (simple) design and contrast matrices for use with... |
| fpca | Runs a principal components analysis, the facile way. |
| messages-warnings-errors | Extracts messages, warnings, and error messages from a... |
| model | Extract the model used for an analysis |
| param | Extract the value of a parameter(s) used in a FacileAnalysis... |
| ranks_and_signatures | Extracts ranks and signatures from a FacileAnalysisResult. |
| redo | Redoes the analysis based on something new (samples, params,... |
| reexports | Objects exported from other packages |
| refds | Reconstitute FacileDataStore links from unfds'd objects |
| serialize | Save and load FacileAnalysisResult objects to/from disk. |
| signature | Converts an analysis result into a "signature" type of thing. |
| signed | Are these results (ranks, signatures) signed? |
| status | Reports the status of the AnalysisResult |
| unfds | Strip and restore FacileDataStore pointers from/to... |
| with_sample_covs | Retrieves sample covariates with option to use custom... |
