with_sample_covs: Retrieves sample covariates with option to use custom...

In facilebio/FacileAnalysis: Modularized and interactive analyses over a FacileDataStore

Retrieves sample covariates with option to use custom covariates by user.

Description

This returns a mix of custom covs that might be provided by a passed (wide) data.frame and the ones stored in the datastore. Covariates passed in by an extra data.frame or the original sample descriptor are given higher precedence.

Usage

with_sample_covs(
  x,
  covariates = NULL,
  custom_covariates = NULL,
  custom_key = Sys.getenv("USER"),
  ...,
  verbose = FALSE
)

Arguments

x	a sample descriptor (facile_frame)
covariates	the names of the covariates to retrieve from the datstore. Defaults to NULL, which is all of them.
custom_covariates	a wide (sample, dataset, cov1, cov2, ...) data.frame of extra covariates the user wants to add to the sampel descriptor x.
custom_key	for FacileData::with_sample_covariates()

Value

a wider version of x with more covariates attached to it.

facilebio/FacileAnalysis documentation built on Nov. 23, 2024, 4:40 a.m.