Files in facilebio/FacileAnalysis
Modularized and interactive analyses over a FacileDataStore
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yaml
.github/workflows/test-coverage.yaml
.gitignore
DESCRIPTION
LICENSE.md
NAMESPACE
R/api.R
R/biocbox.R
R/facile_api_extras.R
R/fdge-base.R
R/fdge-compare.R
R/fdge-helpers.R
R/fdge-interact.R
R/feature-rankings.R
R/ffsea-base.R
R/ffsea-interact.R
R/ffsea-meta.R
R/flm_def-base.R
R/fpca-base.R
R/fpca-compare.R
R/fpca-interact.R
R/logging.R
R/messages-warnings-errors.R
R/package.R
R/serialization.R
R/sparrow-extensions.R
R/test-helpers.R
R/unfds.R
R/utils.R
README.Rmd
README.md
codecov.yml
inst/extdata/analysis-params/fdge/assay-methods.csv
inst/extdata/analysis-params/fdge/method-params.csv
inst/extdata/testdata/ttest-res.csv
inst/scripts/edgeRQLF-workflow.R
man/FacileAnalysisResultViz.Rd
man/biocbox.Rd
man/comparable.Rd
man/compare.Rd
man/contrast.Rd
man/design.Rd
man/faro.Rd
man/fdge-helpers.Rd
man/fdge.Rd
man/fdge_methods.Rd
man/ffsea.Rd
man/ffsea_methods.Rd
man/figures/fdge-shine.gif
man/figures/fdge-shine.png
man/figures/vignette-fdgeGadget-trim.gif
man/figures/vignette-shine-dge-short.gif
man/figures/vignette-shine-fpca.gif
man/figures/vignette-shine-pca-gsea.gif
man/flm_def.Rd
man/fpca.Rd
man/messages-warnings-errors.Rd
man/model.Rd
man/param.Rd
man/ranks_and_signatures.Rd
man/redo.Rd
man/reexports.Rd
man/refds.Rd
man/serialize.Rd
man/signature.Rd
man/signed.Rd
man/status.Rd
man/unfds.Rd
man/with_sample_covs.Rd
pkgdown/_pkgdown.yml
pkgdown/extra.css
tests/.gitignore
tests/scratch/flmdef-wtf.R
tests/testthat.R
tests/testthat/helper-FacileAnalyisResult-validity.R
tests/testthat/test-biocbox.R
tests/testthat/test-facile_api_extensions.R
tests/testthat/test-fdge.R
tests/testthat/test-fdge_model_def.R
tests/testthat/test-ffsea.R
tests/testthat/test-fpca.R
tests/testthat/test-interaction-analysis.R
tests/testthat/test-serialization.R
vignettes-wip/FacileAnalysis.Rmd
vignettes-wip/FacileRnaSeqGene.Rmd
vignettes-wip/FacileRnaSeqGeneEdgeRQL-tests.Rmd
vignettes-wip/FacileRnaSeqGeneEdgeRQL.Rmd
vignettes/FacileAnalysis-RNAseq.Rmd
vignettes/FacileAnalysis-examples.Rmd
vignettes/FacileAnalysis-fdge.Rmd
vignettes/FacileAnalysis-fpca.Rmd
vignettes/FacileAnalysis-fsea.Rmd
vignettes/custom.css
vignettes/images/animated/vignette-fdgeGadget-trim.gif
vignettes/images/animated/vignette-shine-dge-short.gif
vignettes/images/animated/vignette-shine-fpca.gif
vignettes/images/animated/vignette-shine-pca-gsea.gif
vignettes/images/icons/INFO.txt
vignettes/images/icons/callout-border.png
vignettes/images/icons/callouts/1.png
vignettes/images/icons/callouts/10.png
vignettes/images/icons/callouts/11.png
vignettes/images/icons/callouts/12.png
vignettes/images/icons/callouts/13.png
vignettes/images/icons/callouts/14.png
vignettes/images/icons/callouts/15.png
vignettes/images/icons/callouts/2.png
vignettes/images/icons/callouts/3.png
vignettes/images/icons/callouts/4.png
vignettes/images/icons/callouts/5.png
vignettes/images/icons/callouts/6.png
vignettes/images/icons/callouts/7.png
vignettes/images/icons/callouts/8.png
vignettes/images/icons/callouts/9.png
vignettes/images/icons/caution.png
vignettes/images/icons/download.png
vignettes/images/icons/example.png
vignettes/images/icons/home.png
vignettes/images/icons/important.png
vignettes/images/icons/next.png
vignettes/images/icons/note.png
vignettes/images/icons/prev.png
vignettes/images/icons/tip.png
vignettes/images/icons/up.png
vignettes/images/icons/warning.png
vignettes/images/icons/wip-full.png
vignettes/images/icons/wip.png
vignettes/library.bib
vignettes/vignette.css
