extract_transcribed_info_from_ensembl_gtf: Extract gene- and transcript-level information from an...
In facilebio/FacileData: A fluent API for accessing multi-assay high-throughput genomics data
View source: R/extract_transcribed_info_from_ensembl_gtf.R
extract_transcribed_info_from_ensembl_gtf R Documentation
Extract gene- and transcript-level information from an ENSEMBL gtf.
Description
This was written for release_28 annotations. This is noted because some
column names seemsed to have changed, ie. "gene_type" instead of
"gene_biotype", etc. Let's see how consistent this is!
Usage
extract_transcribed_info_from_ensembl_gtf(
fn,
gene_type = "gene_type",
transcript_type = "transcript_type"
)
Arguments
fn
the path to the ENSEMBL (or GENCODE) GTF
Value
a list of tibbles with $transcript_info and $gene_info elements
facilebio/FacileData documentation built on Feb. 23, 2024, 9:14 a.m.
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View source: R/extract_transcribed_info_from_ensembl_gtf.R
| extract_transcribed_info_from_ensembl_gtf | R Documentation |
Extract gene- and transcript-level information from an ENSEMBL gtf.
Description
This was written for release_28 annotations. This is noted because some column names seemsed to have changed, ie. "gene_type" instead of "gene_biotype", etc. Let's see how consistent this is!
Usage
extract_transcribed_info_from_ensembl_gtf(
fn,
gene_type = "gene_type",
transcript_type = "transcript_type"
)
Arguments
fn |
the path to the ENSEMBL (or GENCODE) GTF |
Value
a list of tibbles with $transcript_info and $gene_info elements
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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