Description Usage Arguments Details Value Author(s) References See Also Examples
This function finds maximum likelihood estimates of hybrid index as described by Buerkle (2005) using the packages introgress
1 |
data |
an |
hybridindex
returns a hybrid index estimate with its 95% confidence interval. See est.h
and Buerkle (2005) for additional details.
A data frame with estimates of hybrid index and upper and lower limits of its 95% confidence intervals, which falls within two support units of the maximum-likelihood estimate:
lower |
95% confidence interval lower limit. |
h |
Maximum-likelihood estimate of the hybrid index. |
upper |
95% confidence interval upper limit. |
F. Balao fbalao@us.es; J.L. Garc?a-Casta?o
Buerkle C. A. (2005) Maximum-likelihood estimation of a hybrid index based on molecular markers. Molecular Ecology Notes, 5: 684-687.
Gompert Z. and Buerkle C. A. (2010) introgress: a software package for mapping components of isolation in hybrids. Molecular Ecology Resources,10, 378-384
1 2 3 4 5 | ## simulate parentals and F1 hybrids
hybrids<-hybridsim(Nmarker=50, Na=10, Nb=10, Nf1=10, type="neutral", hybrid="F1")
## estimate hybrid index
hest<-hybridindex(hybrids)
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