Man pages for fboehm/pleio
Likelihood ratio test to distinguish pleiotropy from linkage
| assemble_Ve | Assemble into a matrix Ve from fit1_bvlmm() output |
| assemble_Vg | Assemble into a matrix Vg from fit1_bvlmm() output |
| calc_det_rss | Calculate determinants of cross-product of residuals matrices |
| calc_ll_bvlmm | Calculate log-likelihood for a bivariate LMM |
| calc_lod | Calculate LODs - two profile and one joint - for two traits |
| calc_res | Calculate an array of residuals using Haley-Knott regression |
| calc_rss | One-dimensional scan over a region of interest using only... |
| calc_rss_one | Calculate RSS for a single locus and a single trait |
| fit1_bvlmm | Fit a 2-locus, multivariate trait linear mixed effects model |
| hk_residuals | Calculate residuals with Haley-Knott regression |
| prep_pheno | Prepare phenotype for use with scan functions |
| sim_pheno | Simulate phenotypes from genotype data |
| sim_pheno2 | Simulate two phenotypes simultaneously |
| sim_pheno_lmm | Simulate bivariate phenotype with incorporation of random... |
| stagger_mats | Stagger two matrices of same size within a larger,... |
