calc_ll_bvlmm: Calculate log-likelihood for a bivariate LMM
In fboehm/pleio: Likelihood ratio test to distinguish pleiotropy from linkage
Description
Calculate log-likelihood for a bivariate LMM
Usage
1
calc_ll_bvlmm(yvec, Xmat, betahat, Vg, Ve, Kmat)
Arguments
yvec
a vector of phenotype values, after removing NA values
Xmat
a design matrix with needed number of rows
betahat
estimate of beta; a vector of length 16
Vg
2 by 2 Vg matrix
Ve
2 by 2 Ve matrix
Kmat
kinship matrix, for appropriate chromosome
fboehm/pleio documentation built on May 16, 2019, 11:10 a.m.
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Description
Calculate log-likelihood for a bivariate LMM
Usage
1 | calc_ll_bvlmm(yvec, Xmat, betahat, Vg, Ve, Kmat)
|
Arguments
yvec |
a vector of phenotype values, after removing NA values |
Xmat |
a design matrix with needed number of rows |
betahat |
estimate of beta; a vector of length 16 |
Vg |
2 by 2 Vg matrix |
Ve |
2 by 2 Ve matrix |
Kmat |
kinship matrix, for appropriate chromosome |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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