fit1_bvlmm: Fit a 2-locus, multivariate trait linear mixed effects model

Description Usage Arguments

Description

Fit a 2-locus, multivariate trait linear mixed effects model

Usage

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fit1_bvlmm(Y, X1, X2, Kmat, tol = 1e-07, maxcyc = 100, verbose = 10,
  start = c(0.1, 0.1, 0, 1, 1, 0), taper = rep(1/2, maxcyc))

Arguments

Y

a phenotypes matrix with one row per subject and one trait per column

X1

genotype probabilities for first locus, one row per subject

X2

genotype probabilities for second locus, one row per subject

Kmat

a kinship matrix

tol

value of tol to be passed to regress()

maxcyc

value of maxcyc passed to regress()

verbose

value of verbose passed to regress()

start

value of start passed to regress()

taper

value of taper passed to regress()


fboehm/pleio documentation built on May 16, 2019, 11:10 a.m.