qbHyper: MCMC samples for hyper dataset from R/qtl

In fboehm/qtlbim: QTL Bayesian Interval Mapping

Description

Retrieve MCMC samples for hyper dataset from R/qtl. Code provided to recreate qbHyper if desired. These samples are used in vignettes and demos.

Usage

data(qbHyper)

See Also

hyper, qb.genoprob, qb.mcmc

Examples

data(qbHyper)
summary(qbHyper)
## Not run: 
## Here is code to generate qbHyper.

## Get data from R/qtl.
data(hyper)

## Restrict to autosomes.
hyper <- subset(hyper, chr = 1:19)

## Calculate genotype probabilities.
hyper <- qb.genoprob(hyper, step=2)

## Create MCMC samples.
qbHyper <- qb.mcmc(hyper, n.thin = 40, seed = 1616)

## The next line saves qbHyper as an external binary file.
save("qbHyper", file = "qbHyper.RData")

## End(Not run)

fboehm/qtlbim documentation built on Feb. 16, 2021, 12:04 a.m.