pairloci: Summaries of epistatic pairs of loci.

In fboehm/qtlbim: QTL Bayesian Interval Mapping

Description

Summaries and detailed scatterplot showing all MCMC samples for epistatic pairs for selected chromosomes.

Usage

qb.pairloci(qbObject, chr, ...)
## S3 method for class 'qb.pairloci'
plot(x, main, cex = 0.75, ... )
## S3 method for class 'qb.pairloci'
print(x, ... )
## S3 method for class 'qb.pairloci'
summary(object, ... )

Arguments

qbObject	Object of class qb.
object	Object of class qb.pairloci.
x	Object of class qb.pairloci.
chr	Identifiers for one or two chromosomes.
main	Main title for plot.
cex	Character expansion of plot symbols.
...	Parameters to methods.

Details

Find pairs of loci in MCMC samples. Produce scatter plot with generic plot or show numerical summary. The plot provides position detail complementary to qb.multloci and qb.scantwo.

Author(s)

Brian S. Yandell, [e-mail]

References

http://www.qtlbim.org

See Also

plot.qb, qb.scantwo, qb.multloci

Examples

data(qbExample)

tmpar <- par(mfrow = c(2,2))
temp <- qb.pairloci(qbExample, c(1,2))
summary(temp)
plot(temp)
temp <- qb.pairloci(qbExample, c(1,3))
summary(temp)
plot(temp)
par(tmpar)

fboehm/qtlbim documentation built on Feb. 16, 2021, 12:04 a.m.