get_gnm_prp_settings: Settings for PopReport Pedigrees From Genmon

In fbzwsqualitasag/qpdt: Consistency Checks For Animal Pedigrees

Description

All input parameters that change with the type of pedigree are returned in a list

Usage

get_gnm_prp_settings(
  ps_id_col = "#animal",
  ps_sire_col = "sire",
  ps_dam_col = "dam",
  ps_bd_col = "birth_date",
  ps_sex_col = "sex",
  ps_plz_col = "plz",
  ps_introg_col = "introg",
  ps_inb_col = "inb_gen",
  ps_cryo_col = "cryo",
  pn_id_col = 1,
  pn_sire_col = 2,
  pn_dam_col = 3,
  ps_col_delim = "|",
  pl_dtype = list(col = c("#animal", "sire", "dam", "birth_date", "sex", "plz",
    "introg", "inb_gen", "cryo"), dtp = c("integer", "integer", "integer", "date",
    "character", "integer", "double", "logical", "logical"))
)

Arguments

ps_id_col	column header for identifiers
ps_sire_col	column header for sire
ps_dam_col	column header for dam
ps_bd_col	column header for birthday
ps_sex_col	column header for sex
ps_plz_col	column header for postal code
ps_introg_col	column header for introgression
ps_inb_col	column header for inbreeding
ps_cryo_col	column header for cryo conservation
pn_id_col	column index for id in pedigree
pn_sire_col	column index for sire in pedigree
pn_dam_col	column index for dam in pedigree
ps_col_delim	column delimiter
pl_dtype	list with datatypes

fbzwsqualitasag/qpdt documentation built on April 5, 2021, 9:28 p.m.