deseqresult2DEgenes: Generate a tidy table with the DE genes from the results of...
In federicomarini/ideal: Interactive Differential Expression AnaLysis
deseqresult2DEgenes R Documentation
Generate a tidy table with the DE genes from the results of DESeq
Description
Generate a tidy table with the DE genes from the results of DESeq
Usage
deseqresult2DEgenes(deseqresult, FDR = 0.05)
Arguments
deseqresult
A DESeq2::DESeqResults() object
FDR
Numeric value, the significance level for thresholding adjusted p-values
Value
A "tidy" data.frame with only genes marked as differentially expressed
Examples
# with simulated data...
library(DESeq2)
dds <- DESeq2::makeExampleDESeqDataSet(n = 100, m = 8, betaSD = 2)
dds <- DESeq(dds)
res <- results(dds)
deseqresult2DEgenes(res)
federicomarini/ideal documentation built on Dec. 21, 2024, 8:46 p.m.
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| deseqresult2DEgenes | R Documentation |
Generate a tidy table with the DE genes from the results of DESeq
Description
Generate a tidy table with the DE genes from the results of DESeq
Usage
deseqresult2DEgenes(deseqresult, FDR = 0.05)
Arguments
deseqresult |
A |
FDR |
Numeric value, the significance level for thresholding adjusted p-values |
Value
A "tidy" data.frame with only genes marked as differentially expressed
Examples
# with simulated data...
library(DESeq2)
dds <- DESeq2::makeExampleDESeqDataSet(n = 100, m = 8, betaSD = 2)
dds <- DESeq(dds)
res <- results(dds)
deseqresult2DEgenes(res)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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