read_gmt: Read in a GMT file
In federicomarini/ideal: Interactive Differential Expression AnaLysis
View source: R/genesignatures.R
read_gmt R Documentation
Read in a GMT file
Description
Returns a list of pathways from a GMT file.
Usage
read_gmt(gmtfile)
Arguments
gmtfile
A character value, containing the location of the GMT formatted
file. It can also be a file found online
Value
A list of vectors, one for each pathway in the GMT file.
Examples
# this example reads in the freely available pathways from wikipathways
## Not run:
mysigs <- read_gmt(
"http://data.wikipathways.org/20240910/gmt/wikipathways-20240910-gmt-Homo_sapiens.gmt"
)
head(mysigs)
# see how the gene identifiers are encoded as ENTREZ id
## End(Not run)
federicomarini/ideal documentation built on Sept. 29, 2024, 8:49 p.m.
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View source: R/genesignatures.R
| read_gmt | R Documentation |
Read in a GMT file
Description
Returns a list of pathways from a GMT file.
Usage
read_gmt(gmtfile)
Arguments
gmtfile |
A character value, containing the location of the GMT formatted file. It can also be a file found online |
Value
A list of vectors, one for each pathway in the GMT file.
Examples
# this example reads in the freely available pathways from wikipathways
## Not run:
mysigs <- read_gmt(
"http://data.wikipathways.org/20240910/gmt/wikipathways-20240910-gmt-Homo_sapiens.gmt"
)
head(mysigs)
# see how the gene identifiers are encoded as ENTREZ id
## End(Not run)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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