Files in feralaes/cdx2cea
A cost-efectiveness analysis of testing stage II colon cancer patients for the absence of CDX2 biomarker followed by adjuvant chemotherapy
.DS_Store
.Rbuildignore
.gitignore
CODE_OF_CONDUCT.md
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md
R/.DS_Store
R/01_model_inputs_functions.R
R/02_decision_model_functions.R
R/03_calibration_functions.R
R/04_validation_functions.R
R/05a_probabilistic_analysis_functions.R
R/05b_deterministic_analysis_functions.R
R/cdx2cea.R
R/data_all_cause_mortality.R
R/data_calib_post_dist.R
R/data_calib_post_map.R
R/data_calibration_targets.R
R/data_cea_psa.R
R/data_posterior_summ.R
R/data_psa_object.R
R/open_guide.R
R/utils-pipe.R
README.Rmd
README.md
_pkgdown.yaml
analysis/01_model_inputs.R
analysis/02_decision_model.R
analysis/03_calibration.R
analysis/04_validation.R
analysis/05a_probabilistic_analysis.R
analysis/05b_deterministic_analysis.R
analysis/05c_value_of_information.R
analysis/_master.R
cdx2cea.Rproj
data-raw/.DS_Store
data-raw/01_all_cause_mortality.R
data-raw/01_all_cause_mortality.csv
data-raw/01_all_cause_mortality_2015.csv
data-raw/03_calibration_targets.R
data-raw/03_imis_output.R
data-raw/05a_psa_dataset.R
data-raw/USA_bltper_1x1.csv
data/.DS_Store
data/03_calibration_targets.RData
data/03_summary_posterior.RData
data/05a_probabilistic_cea_results.RData
data/05b_owsa_icer.RData
data/05b_twsa_icer_hrRecurCDX2neg_vs_hrCDX2negtrt.RData
data/05b_twsa_icer_pCDX2_vs_hrCDX2negtrt.RData
data/05b_twsa_icer_pCDX2_vs_hrCDX2negtrt_50k.RData
data/05b_twsa_nmb_hrRecurCDX2neg_vs_hrCDX2negtrt_100k.RData
data/05b_twsa_nmb_hrRecurCDX2neg_vs_hrCDX2negtrt_50k.RData
data/05b_twsa_nmb_pCDX2_vs_hrCDX2negtrt_100k.RData
data/05b_twsa_nmb_pCDX2_vs_hrCDX2negtrt_50k.RData
data/all_cause_mortality.rda
data/df_calibration_targets.rda
data/df_params_init.rda
data/l_psa.rda
data/m_calib_post.rda
data/v_calib_post_map.rda
data/v_calib_post_mean.rda
docs/404.html
docs/apple-touch-icon-120x120.png
docs/apple-touch-icon-152x152.png
docs/apple-touch-icon-180x180.png
docs/apple-touch-icon-60x60.png
docs/apple-touch-icon-76x76.png
docs/apple-touch-icon.png
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/favicon-16x16.png
docs/favicon-32x32.png
docs/favicon.ico
docs/link.svg
docs/logo.png
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/sitemap.xml
figs/02_model_diagram.png
figs/02_trace_plot.jpg
figs/02_trace_plot.pdf
figs/02_trace_plot.png
figs/03_calibration_targets.jpg
figs/03_calibration_targets.pdf
figs/03_calibration_targets.png
figs/03_posterior-IMIS-correlation-1k.jpeg
figs/03_posterior-IMIS-correlation-1k.pdf
figs/03_posterior-IMIS-correlation-1k.png
figs/03_posterior_v_prior-IMIS-1k.jpg
figs/03_posterior_v_prior-IMIS-1k.pdf
figs/03_posterior_v_prior-IMIS-1k.png
figs/04_validation_posterior_vs_targets.jpg
figs/04_validation_posterior_vs_targets.pdf
figs/04_validation_posterior_vs_targets.png
figs/05a_cea_frontier_psa.png
figs/05a_cea_plane_scatter.png
figs/05a_ceac_ceaf.png
figs/05a_elc.png
figs/05b_cea_frontier.png
figs/05b_owsa_icer.pdf
figs/05b_owsa_icer.png
figs/05b_time-states-all-patients.pdf
figs/05b_time-states-all-patients.png
figs/05b_twsa_hr_Recurr_CDXneg_Rx_RecurrCDXnegRx_nmb_100k.pdf
figs/05b_twsa_hr_Recurr_CDXneg_Rx_RecurrCDXnegRx_nmb_100k.png
figs/05b_twsa_hr_Recurr_CDXneg_Rx_RecurrCDXnegRx_nmb_50k.pdf
figs/05b_twsa_hr_Recurr_CDXneg_Rx_RecurrCDXnegRx_nmb_50k.png
figs/05b_twsa_p_CDX2neg_hr_RecurrCDXnegRx_nmb_100k.pdf
figs/05b_twsa_p_CDX2neg_hr_RecurrCDXnegRx_nmb_100k.png
figs/05b_twsa_p_CDX2neg_hr_RecurrCDXnegRx_nmb_50k.pdf
figs/05b_twsa_p_CDX2neg_hr_RecurrCDXnegRx_nmb_50k.png
figs/05c_evpi_ind.png
figs/05c_evpi_pop.pdf
figs/05c_evpi_pop.png
figs/Figure 4 - TWSA.png
figs/manuscript/Figure 1 - CRC_CDX2_State-Transition_Diagram.pdf
figs/manuscript/Figure 2 - time-states-all-patients.pdf
figs/manuscript/Figure 2 - time-states-all-patients.png
figs/manuscript/Figure 2 - time-states-all-patients.tiff
figs/manuscript/Figure 3 - OWSA.pdf
figs/manuscript/Figure 3 - OWSA.png
figs/manuscript/Figure 3 - OWSA.tiff
figs/manuscript/Figure 4 - TWSA.pdf
figs/manuscript/Figure 4 - TWSA.png
figs/manuscript/Figure 4 - TWSA.tiff
figs/manuscript/Figure 5 - CEAC_CEAF_EVPI.pdf
figs/manuscript/Figure 5 - CEAC_CEAF_EVPI.png
figs/manuscript/Figure 5 - CEAC_CEAF_EVPI.tiff
figs/manuscript/Figure 5 - CEAC_CEAF_EVPI_ELC.pdf
figs/manuscript/Figure 5 - CEAC_CEAF_EVPI_ELC.png
figs/manuscript/Figure 5 - CEAC_CEAF_EVPI_ELC.tiff
figs/manuscript/fig04_TWSA.pdf
figs/manuscript/fig04_TWSA.png
figs/manuscript/fig04_TWSA.tiff
figs/manuscript/fig05a_ceac_ceaf.pdf
figs/manuscript/fig05a_ceac_ceaf.png
figs/manuscript/fig05a_ceac_ceaf.tiff
figs/manuscript/fig05b_evpi_pop.pdf
figs/manuscript/fig05b_evpi_pop.png
figs/manuscript/fig05b_evpi_pop.tiff
figs/manuscript/fig05c_elc.pdf
figs/manuscript/fig05c_elc.png
figs/manuscript/fig05c_elc.tiff
inst/.DS_Store
inst/CITATION
inst/WORDLIST
inst/figs/.DS_Store
inst/figs/Figure 1 - CRC_CDX2_State-Transition_Diagram 2.png
inst/figs/Figure 1 - CRC_CDX2_State-Transition_Diagram.jpg
inst/figs/Figure 1 - CRC_CDX2_State-Transition_Diagram.pdf
inst/figs/Figure 1 - CRC_CDX2_State-Transition_Diagram.png
inst/figs/Figure 1 - CRC_CDX2_State-Transition_Diagram_tansp.jpg
inst/figs/cdx2cea_hexsticker.png
man/all_cause_mortality.Rd
man/calculate_ce_out.Rd
man/calibration_out.Rd
man/ce_model.Rd
man/darthpack.Rd
man/data_summary.Rd
man/decision_model.Rd
man/df_calibration_targets.Rd
man/df_cea_psa.Rd
man/df_posterior_summ.Rd
man/equal_breaks.Rd
man/figures/logo.png
man/generate_params_bounds.Rd
man/generate_psa_params.Rd
man/get_os.Rd
man/l_psa.Rd
man/likelihood.Rd
man/load_all_params.Rd
man/load_mort_data.Rd
man/load_params_init.Rd
man/log_lik.Rd
man/log_lik_par.Rd
man/log_post.Rd
man/log_prior.Rd
man/m_calib_post.Rd
man/open_guide.Rd
man/pipe.Rd
man/plot_trace.Rd
man/posterior.Rd
man/prior.Rd
man/run_probsa.Rd
man/sample.prior.Rd
man/update_param_list.Rd
man/v_calib_post_map.Rd
output/03_imis_output.RData
output/05a_psa_dataset.RData
tables/03_summary_posterior.RData
tables/03_summary_posterior.csv
tables/05a_probabilistic_cea_results.RData
tables/05a_probabilistic_cea_results.csv
tables/05b_deterministic_cea_results.RData
tables/05b_deterministic_cea_results.csv
tests/testthat.R
tests/testthat/test_02_simulation_model_functions.R
tests/testthat/test_05a_deterministic_analysis_function.R
