string: STRING interactome

In fernandoPalluzzi/SEMdata: Datasets for SEM-based network analysis using the SEMgraph R package

STRING interactome

Description

STRING interactome version 10.5.

Usage

string

Format

"string" is an igraph network object of 9725 nodes and 170987 edges corresponding to the STRING interactome (version 10.5).

Source

https://string-db.org

References

Szklarczyk D, Gable AL, Lyon D, Junge A, Wyder S, Huerta-Cepas J, Simonovic M, Doncheva NT, Morris JH, Bork P, Jensen LJ, von Mering C (2019). STRING v11: protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets. Nucleic Acids Res., 47: D607-613. <https://doi.org/10.1093/nar/gky1131>

Examples

string
summary(string)

# STRING degrees of freedom
vcount(string)*(vcount(string) - 1)/2 - ecount(string)

# STRING average shortest path length
mean_distance(string)

fernandoPalluzzi/SEMdata documentation built on June 27, 2022, 7:04 a.m.