ctInputDE: Input expression data of gene/TE for differentially expressed...

ctInputDER Documentation

Input expression data of gene/TE for differentially expressed analysis within same species

Description

TEKRABber can also be used comparing orthologs and transposable elements within same species, i.e., control and treatment. Here we provide an example data for demonstration. This data was based on syn8466812 RNA-seq (Allen M et al., 2016). However, the expression data was modified due to confidential agreement. Therefore, it cannot represent the original data.

Usage

data(ctInputDE)

Format

An object contains 2 expression data:

gene

input gene data for DE analysis comparing control and treatment

te

input TE data for DE analysis comparing control and treatment

Examples

data(ctInputDE)
geneInputDE <- ctInputDE$gene
teInputDE <- ctInputDE$te


ferygood/TEKRABber documentation built on July 31, 2024, 6:36 p.m.