fetchDataHmChimp: Example output comparing human and chimpanzee data using...

In ferygood/TEKRABber: An R package estimates the correlations of orthologs and transposable elements between two species

Example output comparing human and chimpanzee data using orhtologScale()

Description

An output list of data contains 7 elements after using orthologScale(), including (1) orthology table comparing human and chimpanzee. (2) scaling factor for orthologous genes (3) gene count table from reference species (4) gnee count table from species you want to compare (5) scaling factor for TEs (6) TE count table from reference species (7) TE count table from the species you want to compare. The aim to provide this dataset is to save time for user running the vignettes and give a template for demonstration.

Usage

data(fetchDataHmChimp)

Format

An object contains 2 elements:

orthologTable

orthology information from Ensembl

scaleFactor

scaling factor to normalize data

Examples

data(fetchDataHmChimp)
fetchData <- fetchDataHmChimp
fetchData$orthologTable
fetchData$scaleFactor

ferygood/TEKRABber documentation built on Jan. 29, 2024, 6:34 p.m.