Files in ff98li/scRGNet
Perform scRNA-seq Analysis using Single-cell Graphical Neural Network (scGNN) Framework
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/data.R
R/featureAE.R
R/graph.R
R/loss.R
R/main.R
R/plot.R
R/preprocessCSV.R
R/runscRGNet.R
R/train.R
R/utils.R
README.Rmd
README.md
data/gene_counts.rda
data/gene_counts_small.rda
inst/CITATION
inst/REFERENCES.bib
inst/extdata/Degree_ex.png
inst/extdata/GSE138852_counts.csv.gz
inst/extdata/GSE138852_small.csv
inst/extdata/Log_ex.png
inst/extdata/degree_batch_500_epochs_LTMG.png
inst/extdata/init_ui.PNG
inst/extdata/log_batch_500_epochs_LTMG.png
inst/extdata/network_batch_500_epochs_LTMG.png
inst/extdata/overview.png
inst/extdata/shiny_console_preprocess.PNG
inst/extdata/shiny_degree.PNG
inst/extdata/shiny_log.PNG
inst/extdata/shiny_net.PNG
inst/extdata/shiny_preprocess.PNG
inst/extdata/shiny_run_options.PNG
inst/extdata/structure.png
inst/shiny-scripts/server.R
inst/shiny-scripts/ui.R
man/AE.Rd
man/GCNModelAE.Rd
man/GCNModelVAE.Rd
man/GraphCovolution.Rd
man/InnerProductDecoder.Rd
man/calculate_knn_graph.Rd
man/figures/README-pressure-1.png
man/gene_counts.Rd
man/gene_counts_small.Rd
man/generateNetwork.Rd
man/loss_function_gcn.Rd
man/loss_function_graph.Rd
man/plotCellNet.Rd
man/plotDegree.Rd
man/plotLog.Rd
man/preprocessCSV.Rd
man/regulation_mse_loss_function.Rd
man/runFeatureAE.Rd
man/runLTMG.Rd
man/runscRGNet.Rd
man/scDataset.Rd
man/setHardware.Rd
man/setHyperParams.Rd
man/train.Rd
man/vallina_mse_loss_function.Rd
scRGNet.Rproj
tests/testthat.R
tests/testthat/test-generateNetwork.R
tests/testthat/test-plot.R
tests/testthat/test-preprocessCSV.R
tests/testthat/test-runFeatureAE.R
tests/testthat/test-runLTMG.R
vignettes/.gitignore
vignettes/Introduction_to_scRGNet.Rmd
vignettes/Introduction_to_scRGNet_shinyapp.Rmd
