Files in ff98li/scRGNet
Perform scRNA-seq Analysis using Single-cell Graphical Neural Network (scGNN) Framework

.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/data.R R/featureAE.R R/graph.R R/loss.R R/main.R R/plot.R R/preprocessCSV.R R/runscRGNet.R R/train.R R/utils.R README.Rmd README.md
data/gene_counts.rda
data/gene_counts_small.rda
inst/CITATION
inst/REFERENCES.bib
inst/extdata/Degree_ex.png
inst/extdata/GSE138852_counts.csv.gz
inst/extdata/GSE138852_small.csv
inst/extdata/Log_ex.png
inst/extdata/degree_batch_500_epochs_LTMG.png
inst/extdata/init_ui.PNG
inst/extdata/log_batch_500_epochs_LTMG.png
inst/extdata/network_batch_500_epochs_LTMG.png
inst/extdata/overview.png
inst/extdata/shiny_console_preprocess.PNG
inst/extdata/shiny_degree.PNG
inst/extdata/shiny_log.PNG
inst/extdata/shiny_net.PNG
inst/extdata/shiny_preprocess.PNG
inst/extdata/shiny_run_options.PNG
inst/extdata/structure.png
inst/shiny-scripts/server.R inst/shiny-scripts/ui.R man/AE.Rd man/GCNModelAE.Rd man/GCNModelVAE.Rd man/GraphCovolution.Rd man/InnerProductDecoder.Rd man/calculate_knn_graph.Rd
man/figures/README-pressure-1.png
man/gene_counts.Rd man/gene_counts_small.Rd man/generateNetwork.Rd man/loss_function_gcn.Rd man/loss_function_graph.Rd man/plotCellNet.Rd man/plotDegree.Rd man/plotLog.Rd man/preprocessCSV.Rd man/regulation_mse_loss_function.Rd man/runFeatureAE.Rd man/runLTMG.Rd man/runscRGNet.Rd man/scDataset.Rd man/setHardware.Rd man/setHyperParams.Rd man/train.Rd man/vallina_mse_loss_function.Rd
scRGNet.Rproj
tests/testthat.R tests/testthat/test-generateNetwork.R tests/testthat/test-plot.R tests/testthat/test-preprocessCSV.R tests/testthat/test-runFeatureAE.R tests/testthat/test-runLTMG.R
vignettes/.gitignore
vignettes/Introduction_to_scRGNet.Rmd vignettes/Introduction_to_scRGNet_shinyapp.Rmd
ff98li/scRGNet documentation built on Jan. 14, 2022, 4:58 a.m.