calculate_knn_graph: Isolation forest based KNN graph

In ff98li/scRGNet: Perform scRNA-seq Analysis using Single-cell Graphical Neural Network (scGNN) Framework

Description

Calculate a KNN graph from a feature matrix and prune the graph using isolation forest.

Usage

calculate_knn_graph(feature_mat, k, hardwareSetup)

Arguments

feature_mat	A feature matrix based on which KNN graph is computed
k	Number of neighbours in KNN graph.
hardwareSetup	Hardware setup for parallelising isolation forest

Value

edgeList

ff98li/scRGNet documentation built on Jan. 14, 2022, 4:58 a.m.