scDataset: scRNA-seq dataset class

In ff98li/scRGNet: Perform scRNA-seq Analysis using Single-cell Graphical Neural Network (scGNN) Framework

Description

Create a new scDataset object.

Get the number of cells in the dataset

Get the expression values of a cell

Usage

scDataset(data, transform = NULL)

Arguments

data	A matrix of pre-processed scRNA-seq data, with genes as rows and samples as columns
transform	A function to transform the matrix

Details

An R6 class to store scRNA-seq data for analysis using Torch

Value

A new scDataset object.

number of cells

A list of sample information

• index - Index of sample in the feature matrix

• sample - Name of the sample

• expr - Gene expression values in the sample

References

\insertRef

scGNNscRGNet \insertReftorchscRGNet \insertRefr6scRGNet

ff98li/scRGNet documentation built on Jan. 14, 2022, 4:58 a.m.