write.ls.to.sif: Extract the "local subnetwork" around a given protein
In fgwinner/LEANR: Finds "Local Subnetworks" Within an Interaction Network which Show Enrichment for Differentially Expressed Genes
Description
Usage
Arguments
Author(s)
See Also
Description
Extract the "local subnetwork" around a given protein and write it to a Cytoscape-readable .sif file
Usage
1
write.ls.to.sif(prot_id, LEANres, outfile)
Arguments
prot_id
protein id compatible with node names used in graph g
LEANres
LEAN result object (list) returned by <run.lean> or <run.lean.fromdata>
outfile
character string describing the location of an output file. Should end in .sif to be able to load it in Cytoscape.
Author(s)
Frederik Gwinner
See Also
fgwinner/LEANR documentation built on May 16, 2019, 12:51 p.m.
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Description Usage Arguments Author(s) See Also
Description
Extract the "local subnetwork" around a given protein and write it to a Cytoscape-readable .sif file
Usage
1 | write.ls.to.sif(prot_id, LEANres, outfile)
|
Arguments
prot_id |
protein id compatible with node names used in graph |
LEANres |
LEAN result object (list) returned by <run.lean> or <run.lean.fromdata> |
outfile |
character string describing the location of an output file. Should end in .sif to be able to load it in Cytoscape. |
Author(s)
Frederik Gwinner
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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