init_rate_map: Construct an index matrix identifying with which states each...

In fintzij/BDAepimodel: Fit Stochastic Epidemic Models in R via Bayesian Data Augmentation

Description

Called internally before rates are parsed when an epimodel object is initialized.

Usage

init_rate_map(rates, states)

Arguments

rates	character vector with strings specifying the flow rates between compartments. Each variable in a rate must correspond to the name of one of the states, params, or covars (covariates not yet implemented).
states	character vector with names of compartments corresponding exactly to the names of compartments used in the *_rates arguments.

Value

binary index matrix indicating which changes in each compartment affect each rate

fintzij/BDAepimodel documentation built on Sept. 20, 2020, 1:44 p.m.