fintzij/BDAepimodel
Fit Stochastic Epidemic Models in R via Bayesian Data Augmentation

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fintzij/BDAepimodel: Fit Stochastic Epidemic Models in R via Bayesian Data Augmentation
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API for fintzij/BDAepimodel
Fit Stochastic Epidemic Models in R via Bayesian Data Augmentation

Global functions
BDAepimodel Man page
BDAepimodel-package Man page
MH_accept_reject Man page Source code
append_missing Man page Source code
buildEigenArray Man page Source code
buildEigenArray_SEIR Man page Source code
buildEigenArray_SIR Man page Source code
buildFBMats Man page Source code
buildRateArray Man page Source code
build_emission_mat Man page Source code
build_fb_mats Source code
build_initdist Man page Source code
build_irm Man page Source code
build_new_irms Man page Source code
build_rate_mat Man page Source code
build_tpm Man page Source code
build_tpm_seqs Man page Source code
calc_obs_likelihood Man page Source code
calc_pop_likelihood Man page Source code Source code
calc_subj_likelihood Source code
check_irm Man page Source code
complexTPM Man page Source code
detect_structure Man page Source code
draw_trajec Man page Source code
est_scale_template Man page Source code
expand_pop_mat Man page Source code
expit Man page Source code
extractRateFunctions Source code
extract_rate_fcns Man page Source code
fit_epimodel Man page Source code
generate_keys Man page Source code
getObsTimeInds Man page Source code
get_tpms_to_build Man page Source code
gibbs_template Man page Source code
hello Man page Source code
init_augmentation Man page Source code
init_config_mat Man page Source code
init_epimodel Man page Source code
init_irm Man page Source code
init_obs_mat Man page Source code
init_rate_map Man page Source code
init_results Man page Source code
init_settings Man page Source code
init_state_lookup Man page Source code
init_trajectories Man page Source code
init_tuning Man page Source code
insertPath Man page Source code
insert_row Man page Source code
insert_trajectory Man page Source code
irm_decomp Man page Source code
joinCubes Man page Source code
logit Man page Source code
match_row Man page Source code
mh_template Man page Source code
normalize Man page Source code
plot_epimodel Man page Source code
plot_latent_posterior Man page Source code
populationLikelihood Man page Source code
prepare_epimodel Man page Source code
rcpp_hello Man page
reinsert_path Man page Source code
remove_trajectory Man page Source code
reorderMat Man page Source code
resolveSubjContrib Man page Source code
retrieveKeys Man page Source code
retrieveSubjPath Man page Source code
sampleEventSubseq Man page Source code
sample_DT_skeleton Source code
sample_at_event_times Man page Source code
sample_at_obs_times Man page Source code
sample_forward Man page Source code
sample_path Man page Source code
sample_path_in_interval Source code
sim_one_event Man page Source code
simulateSIR Man page Source code
simulate_SIR Man page Source code
simulate_epimodel Source code
subjectLikelihood Man page Source code
subject_probabilities Man page Source code
templates Man page Source code
tpmProdSeqs Man page Source code
tpmSeqs Man page Source code
traj_to_obs Man page Source code
tune_proposal Man page Source code
update_matrices Source code
update_obs_mat Man page Source code
update_params Man page Source code
update_tpms Man page Source code
fintzij/BDAepimodel documentation built on Sept. 20, 2020, 1:44 p.m.

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