populationLikelihood: Get the irm keys for the compartment counts in a population...

In fintzij/BDAepimodel: Fit Stochastic Epidemic Models in R via Bayesian Data Augmentation

Description

Get the irm keys for the compartment counts in a population level bookkeeping matrix

Usage

populationLikelihood(pop_mat, irm, initdist, initdist_param_inds,
  flow_inds, keys, inds, loglik)

Arguments

pop_mat	population level bookkeeping matrix
irm	array of rate matrices
initdist	vector of initial state probabilities
initdist_param_inds	vector of indices for admissible initial states
flow_inds	matrix of indices for locations in IRM for each event
keys	vector of irm keys
inds	indices relating to event times, along with t0 and tmax
loglik	boolean indicating whether to return the likelihood or log-likelihood

Value

population level likelihood or log-likelihood

fintzij/BDAepimodel documentation built on Sept. 20, 2020, 1:44 p.m.