plot_latent_posterior: Plot the posterior distribution of the latent paths for...

In fintzij/BDAepimodel: Fit Stochastic Epidemic Models in R via Bayesian Data Augmentation

Description

Plot the posterior distribution of the latent paths for measured states.

Usage

plot_latent_posterior(epimodel, states, times, cm = "med",
  proportion = FALSE, truth = NULL, true_popsize = NULL,
  dat = NULL)

Arguments

epimodel	fitted epimodel object
states	character vector of states for which to plot the posterior
times	sequence of times at which to compute the posterior
cm	"med" if posterior median, 2.5 and 97.5 quantiles are desired, otherwise "mn" if posterior mean, and 95 percent CI are desired
proportion	if true, plot the proportion instead of the counts
truth	true latent trajectory
true_popsize	true population size, defaults to the population size specified in the epimodel object unless otherwise provided.
dat	data matrix in the epimodel object

Value

plot of the posterior distribution of the latent paths

fintzij/BDAepimodel documentation built on Sept. 20, 2020, 1:44 p.m.