stool: The stool data

In fionarhuang/TreeHeatmap: A package to plot heatmaps at different levels of a tree

The stool data

Description

It contains a normalized count table norm_count, and a tree, and a data frame df_branch. Note: this is a processed data only for visualization here, and we don't suggest to use it for data analysis.

Usage

stool

Format

A list of datasets:

norm_count

A matrix with 464 rows and 30 columns. Each row represents a leaf of tree, and each column represent a sample. Samples are collected at different time points (0, 4, or 13 months) on babies that were born differently (c-section or vaginal). For example, 0 M:c_section_1 means that the sample was collected on 0 month (0 M) from baby (_1) in the c-section (c_section) group.

tree

A tree with 464 leaves and 463 internal nodes.

df_branch

A data frame has 464 rows and 3 columns. node: the node numeric id; Detected: Yes or No; pick: TRUE or FALSE.

Source

The data is generated randomly with the R script stool.R in the data-raw folder of this package.

fionarhuang/TreeHeatmap documentation built on Feb. 1, 2024, 7:30 a.m.