Man pages for fischuu/hoardeR
Collect and Retrieve Annotation Data for Various Genomic Data Using Different Webservices
| blastSeq | Sending Genomic Sequences to NCBI Blast service |
| coverageDensity | Calculation of the coverage density |
| findSpecies | Search in the 'species” Object. |
| getAnnotation | Downloading or Importing of Annotation Data |
| getEnsgInfo | Retrieve Gene Information From the NCBI Database. |
| getFastaFromBed | Get fasta information based on locations in bed-format |
| getGeneLocation | Extracting Gene Locations |
| getGeneSeq | Extracting a gene sequence from NCBI database. |
| getSequenceFromNCBI | Extracts a sequence from the NCBI webpage |
| hoardeR-package | Collect and Retrieve Annotation Data for Various Genomic Data... |
| intersectXMLAnnot | Intersect XML object with annotation object |
| plotCoverage | Plots a coverage density object |
| plotHit | Visualization of a cross-species hit |
| print.fa | Print an fa Object |
| species | Available species at NCBI |
| subDose | Rewrite the Dose File from a Beagle Output |
| subGprobs | Rewrite the Gprobs File from a Beagle Output |
| subPhased | Rewrite the Phased File from a Beagle Output |
| summary.fa | Summarize an fa Object |
| tableSpecies | Tables the species in xml file |
| targetScan | Retrieving miRNA target information from targetscan.org |
