subGprobs | R Documentation |
This function takes a Gprobs Beagle output and rewrites the output.
subGprobs(file=NULL, vmmk=NULL, out=NULL, chunkSize=100000, removeInsertions=TRUE,
verbose = TRUE, writeOut=TRUE)
file |
Location of the original Beagle file ( |
vmmk |
Location of the Variant Map Master key ( |
out |
Name and location of the output file ( |
chunkSize |
For large Beagle files, the chunk size. |
removeInsertions |
All Indels will be removed. |
verbose |
The function gives feedback. |
writeOut |
Logical, write the output back to the HDD. |
This function takes a Beagle Gprobs file and rewrites the alleles from numerical to character, based on the information provided in a variant map master key. For larger files the function can process the rewriting in chunks in order to save memory.
A rewritten beagle Gprobs file.
Daniel Fischer
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