subDose: Rewrite the Dose File from a Beagle Output

In fischuu/hoardeR: Collect and Retrieve Annotation Data for Various Genomic Data Using Different Webservices

Rewrite the Dose File from a Beagle Output

Description

This function takes a Dose Beagle output and rewrites the output.

Usage

  subDose(file=NULL, vmmk=NULL, out=NULL, removeInsertions=TRUE, verbose=TRUE)

Arguments

file	Location of the original Beagle file (String).
vmmk	Location of the Variant Map Master key (String).
out	Name and location of the output file (String).
verbose	The function gives feedback.
removeInsertions	All Indels will be removed..

Details

This function takes a Beagle Dose file and rewrites the alleles from numerical to character, based on the information provided in a variant map master key.

Value

A rewritten beagle phased file.

Author(s)

Daniel Fischer

fischuu/hoardeR documentation built on April 13, 2024, 1:20 p.m.