SetRepGroup: Set replication groups numbers

In flajole/MSdata: Mass-spectrometry data analysis package

Description

If there are data about replication groups, corresponding column is renamed in a standard way to "ReplicationGroup".
Otherwise function automatically adds a ReplicationGroup column into sampleData table according to group factors combinations.

Usage

## S4 method for signature 'MSdata'
SetRepGroup(msdata, repFac = NULL, impFac = NULL)

Arguments

msdata	MSdata-class object
repFac	If you already have replication group numbers in sample metadata, set repFac - the name of this factoring variable in table.
impFac	The vector of the names of factors which are taken into account during automatic replication group labeling. If NULL, all grouping factors are used.

Value

MSdata-class object with $ReplicationGroup in sample data table

flajole/MSdata documentation built on May 16, 2019, 1:17 p.m.