acc | Catch curve estimates of total mortality at age (Z) |
accessors | accessor and replacement methods for FLCore classes |
adjust-FLStock-method | Recalculate to adjust abundances to F and M |
ageopt | Age at which a cohort reaches its maximum biomass, calculated... |
AIC | Method AIC |
append-methods | Append objects along the year dimension |
apply-methods | apply method for FLCore classes |
ar1rlnorm | Generates a time series of possible bias-corrected lognormal... |
Arith-methods | Arithmetic operators for FLCore classes |
as.FLSRs | Convert an FLStock into a list of one or FLSR objects. |
bias | Bias of estimates through jackknife |
BIC | Method BIC Bayesian information criterion (BIC) method |
bubbles | Method Bubbles plot |
catchMature | Proportion of mature and inmature fish in the catch |
catch.n-FLQuant-method | catch.n calculation method |
coerce-methods | Convert Objects Between Classes |
compare-methods | A method for comparing FLR objects |
compute | Methods to compute quantities |
computeHarvest-FLStock-missing-method | Computes fishing mortality from abundances, catches and... |
cpue | cpue, a method to generate an observation of a CPUE index of... |
createFLAccesors | Create accesor methods for a given class |
datasets | FLCore datasets |
dbind-methods | Methods for binding objects of array classes along a given... |
dims | Method dims |
dimSummaries | Summaries by dimension |
discardsRatio | Compute the ratio of discards to total catch in numbers or... |
drop-methods | drop method for FLCore array-based classes |
evalPredictModel | Evaluates a predictModel slot inside the object cointaining... |
exp-methods | exp and log methods FLCore array-based classes |
Extract | Extract |
ffwd | Project forward an FLStock for a fbar target |
FLArray | Class FLArray |
FLBiol | Class FLBiol |
FLBiols | Class FLBiols |
FLCohort | Class FLCohort |
FLCohorts | Class FLCohorts |
FLComp | Class FLComp |
FLComps | Class FLComps |
FLI | Class FLI |
FLIndex | Class FLIndex |
FLIndexBiomass | Class FLIndexBiomass |
FLIndices | Class FLIndices |
FLlst | Class FLlst |
FLModel | Class FLModel |
FLModelSim | Class FLModelSim |
FLModelSims | Class FLModelSims |
FLPar | Class FLPar |
FLParJK | Class FLParJK |
FLPars | Class FLPars |
FLQuant | FLQuant class for numerical data |
FLQuantDistr | A class for samples of a probability distribution |
FLQuantJK | A class for jackknifing fisheries data |
FLQuantPoint | Class FLQuantPoint |
FLQuants | Class FLQuants |
FLS | Class FLS |
FLSR | Class FLSR |
FLSRs | 'FLSRS' is a class that extends 'list' through 'FLlst' but... |
FLStock | Class FLStock |
FLStockLen | Class FLStockLen |
FLStocks | Class FLStocks |
FUNCTION | Extract and modify the recruitment time series |
Funwanted | Calculate the discards and landings-associated fishing... |
fwdWindow | Extend a FLR object along the year dimension and set future... |
getSlotNamesClass | Names of slots of a given class |
group | Group objects over some index by applying a function over a... |
growth-models | Growth models |
iav | Compute the inter-annual variability of a time series |
intersect | Returns FLR objects trimmed to their shared dimensions. |
iter | Methods iter |
jackknife | Method jackknife |
join | Joins objects along a dimensions where dimnames differ |
lattice | Lattice methods |
length-based-indicators | Calculate quantile(s) of length distribution |
mase | Compute mean absolute scaled error (MASE) |
meanage | Calculate the mean age in the stock and catch |
meanwt | Calculate the mean weight in stock and catch |
metrics | Extract simply-defined metrics from compex objects |
mohnMatrix | Generate a matrix to compute Mohn's rho for a single metric |
msy-methods | msy: A series of methods to extract or compute MSY-based... |
names | Method names |
operators | FLQuant arithmetic operators that extend objects |
plot | Method plot |
predictModel | A class for model prediction |
production | Returns the computed yearly production |
propagate | Method propagate |
properties | Returns a series of properties of the fisheries element... |
quant | Method quant |
quantTotals | Methods quantTotals |
readVPAIntercatch | Reads a single file with one year of data in VPA format as... |
residuals-FLQuant | residuals |
rnoise | Random noise with different frequencies |
roc | Receiver Operating Characteristic (ROC) |
ruleset | Set of verify rules for an FLR class |
runstest | Computes Runs Test p-values |
rwalk | Generate a random walk time series from a starting point |
show | Method show |
simplify | Aggregate or select along unwanted dimensions |
slim | Drop unnecesary 'iters' |
split | splits _x_ along the _iter_ dimension into the groups defined... |
splom | Method splom |
spread | A function to make available list elements inside a function... |
SRModels | Stock-Recruitment models |
ssb | Calculate or return the Spawning Stock Biomass |
ssb_next | Calculate next yera's SSB from survivors and Fbar |
standardUnits-methods | Standard units of measurement for a complex class object |
summary-methods | Method summary |
survey | A method to generate observations of abundance at age. |
survivors | Calculate the survivors of a stock to the next year. |
sweep-methods | Method sweep for FLCore classes |
tail | Returns the first and last parts of an FLQuant. |
trim | Method trim |
units-FLCore | Method units |
uom | uom Units of Measurement |
uomTable | Table for conversions and operations between units of... |
upperlower-methods | Extract and modify the _lower_ and _upper_ FLModel attibutes. |
verify | Verify FLR objects |
weighted.mean-FLQuants-FLQuants-method | Weighted means along a FLQuants. |
wireframe | Method wireframe |
yearSample | Samples along the year dimension |
z-methods | Total mortality z |
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