API for fmicompbio/mutscan
Preprocessing and Analysis of Deep Mutational Scanning Data
| Global functions | |
|---|---|
| .assertScalar | Source code |
| .assertVector | Source code |
| .getColName | Source code |
| .hasReadComponent | Source code |
| .plotScatter | Source code |
| calcNearestStringDist | Man page Source code |
| calculateFitnessScore | Man page Source code |
| calculateRelativeFC | Man page Source code |
| collapseMutants | Man page Source code |
| collapseMutantsByAA | Man page Source code |
| collapseMutantsBySimilarity | Man page Source code |
| compareCodonPositions | Source code |
| digestFastqs | Man page Source code |
| digestFastqsCpp | Source code |
| findClosestRefSeq | Source code |
| findClosestRefSeqEarlyStop | Source code |
| generateQCReport | Man page Source code |
| groupSimilarSequences | Man page Source code |
| hamming_distance | Source code |
| hamming_shift_distance | Source code |
| levenshtein_distance | Source code |
| linkMultipleVariants | Man page Source code |
| makeBaseHGVS | Source code |
| mergeValues | Source code |
| plotDistributions | Man page Source code |
| plotFiltering | Man page Source code |
| plotMeanDiff | Man page Source code |
| plotPairs | Man page Source code |
| plotTotals | Man page Source code |
| plotVolcano | Man page Source code |
| relabelMutPositions | Man page Source code |
| summarizeExperiment | Man page Source code |
| test_decomposeRead | Source code |
| test_makeAAHGVS | Source code |
| test_mergeReadPairPartial | Source code |
| translateString | Source code |
