plotTotals: Plot the column totals of a selected assay
In fmicompbio/mutscan: Preprocessing and Analysis of Deep Mutational Scanning Data
plotTotals R Documentation
Plot the column totals of a selected assay
Description
Plot the column totals of a selected assay
Usage
plotTotals(se, selAssay = "counts", groupBy = NULL)
Arguments
se
A SummarizedExperiment object, typically generated by
summarizeExperiment().
selAssay
Character scalar specifying the assay in se to
use for the plotting.
groupBy
Character scalar indicating a column in
rowData(se) to group the features by before calculating the
column sums.
Value
A ggplot object.
Author(s)
Charlotte Soneson
Examples
se <- readRDS(system.file("extdata", "GSE102901_cis_se.rds",
package = "mutscan"))[1:200, ]
plotTotals(se)
fmicompbio/mutscan documentation built on March 30, 2024, 9:13 a.m.
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| plotTotals | R Documentation |
Plot the column totals of a selected assay
Description
Plot the column totals of a selected assay
Usage
plotTotals(se, selAssay = "counts", groupBy = NULL)
Arguments
se |
A |
selAssay |
Character scalar specifying the assay in |
groupBy |
Character scalar indicating a column in
|
Value
A ggplot object.
Author(s)
Charlotte Soneson
Examples
se <- readRDS(system.file("extdata", "GSE102901_cis_se.rds",
package = "mutscan"))[1:200, ]
plotTotals(se)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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