generateQCReport: Generate QC report

In fmicompbio/mutscan: Preprocessing and Analysis of Deep Mutational Scanning Data

Generate QC report

Description

Generate QC report

Usage

generateQCReport(
  se,
  outFile,
  reportTitle = "mutscan QC report",
  forceOverwrite = FALSE,
  ...
)

Arguments

se	A SummarizedExperiment object, typically generated with summarizeExperiment().
outFile	Character string providing the name of the output file. Should have the extension .html.
reportTitle	Character string specifying the title of the QC report.
forceOverwrite	Logical scalar, indicating whether an existing file with the same name as outFile should be overwritten.
...	Additional parameters to be forwarded to render, for example quiet = TRUE.

Value

Invisibly, the path to the generated html file.

Author(s)

Charlotte Soneson

See Also

render used to render the html output file.

Examples

## Load SummarizedExperiment object
se <- readRDS(system.file("extdata", "GSE102901_cis_se.rds",
                          package = "mutscan"))
## Define output file
outfile <- tempfile(fileext = ".html")

## Generate QC report
generateQCReport(se, outfile)

fmicompbio/mutscan documentation built on March 30, 2024, 9:13 a.m.