Man pages for fmicompbio/mutscan
Preprocessing and Analysis of Deep Mutational Scanning Data
| calcNearestStringDist | Calculate distances to the nearest string |
| calculateFitnessScore | Calculate fitness scores. |
| calculateRelativeFC | Calculate logFCs relative to WT using edgeR |
| collapseMutantsBySimilarity | Collapse mutants by similarity |
| digestFastqs | Read, filter and digest sequences from fastq file(s). |
| generateQCReport | Generate QC report |
| groupSimilarSequences | Create a conversion table for collapsing similar sequences |
| linkMultipleVariants | Process an experiment with multiple variable sequences |
| plotDistributions | Plot distribution of observed values |
| plotFiltering | Visualize the filtering procedure |
| plotMeanDiff | Construct an MA (mean-difference) plot |
| plotPairs | Make pairs plot of selected assay from a SummarizedExperiment... |
| plotTotals | Plot the column totals of a selected assay |
| plotVolcano | Construct a volcano plot |
| relabelMutPositions | Relabel the positions of mutations in the designated ID |
| summarizeExperiment | Summarize and collapse multiple mutational scanning... |
