Description Usage Arguments Details Value
Simple method for generating a CATMAID URL pointing to a particular skeleton node or connector
1 2  | simple_catmaid_url(dfrow, skid, sid0 = 5, zoom = 0, conn = FALSE,
  treenode_id = NULL, xyz_columns = c("x", "y", "z"))
 | 
dfrow | 
 Required; a single data frame row containing columns of xyz coordinates and (optionally)   | 
skid | 
 Required; the skid of the active skeleton  | 
sid0 | 
 The ID of the desired stack mirror on your CATMAID server.  Found by generating a URL within CATMAID and picking out the   | 
zoom | 
 The desired zoom level (  | 
conn | 
 Whether or not to specify an active connector ID in the URL.  Defaults to   | 
treenode_id | 
 A specific treenode ID to set as the active node.  Useful if you are generating URLs for nodes postsynaptic to a particular skeleton.  Will be ignored if   | 
xyz_columns | 
 A character vector specifying the names of the columns containing x, y, and z coordinates.  Defaults to   | 
Requires the catmaid.server option to be set in .Rprofile
A character string with the CATMAID URL.
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