Description Usage Arguments Details Value
Simple method for generating a CATMAID URL pointing to a particular skeleton node or connector
1 2 | simple_catmaid_url(dfrow, skid, sid0 = 5, zoom = 0, conn = FALSE,
treenode_id = NULL, xyz_columns = c("x", "y", "z"))
|
dfrow |
Required; a single data frame row containing columns of xyz coordinates and (optionally) |
skid |
Required; the skid of the active skeleton |
sid0 |
The ID of the desired stack mirror on your CATMAID server. Found by generating a URL within CATMAID and picking out the |
zoom |
The desired zoom level ( |
conn |
Whether or not to specify an active connector ID in the URL. Defaults to |
treenode_id |
A specific treenode ID to set as the active node. Useful if you are generating URLs for nodes postsynaptic to a particular skeleton. Will be ignored if |
xyz_columns |
A character vector specifying the names of the columns containing x, y, and z coordinates. Defaults to |
Requires the catmaid.server
option to be set in .Rprofile
A character
string with the CATMAID URL.
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